J3_1KD1_012
3D structure
- PDB id
- 1KD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UG*CUGCAAAGUACC*GAGGCGAAAUAGAGCA
- Length
- 30 nucleotides
- Bulged bases
- 1KD1|1|A|U|510, 1KD1|1|A|G|514
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1KD1_012 not in the Motif Atlas
- Homologous match to J3_4V9F_012
- Geometric discrepancy: 0.0332
- The information below is about J3_4V9F_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24879.1
- Basepair signature
- cWW-cWW-cWS-tSH-F-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
1KD1|1|A|U|27
1KD1|1|A|G|28
*
1KD1|1|A|C|480
1KD1|1|A|U|481
1KD1|1|A|G|482
1KD1|1|A|C|483
1KD1|1|A|A|484
1KD1|1|A|A|485
1KD1|1|A|A|486
1KD1|1|A|G|487
1KD1|1|A|U|488
1KD1|1|A|A|489
1KD1|1|A|C|490
1KD1|1|A|C|491
*
1KD1|1|A|G|501
1KD1|1|A|A|502
1KD1|1|A|G|503
1KD1|1|A|G|504
1KD1|1|A|C|505
1KD1|1|A|G|506
1KD1|1|A|A|507
1KD1|1|A|A|508
1KD1|1|A|A|509
1KD1|1|A|U|510
1KD1|1|A|A|511
1KD1|1|A|G|512
1KD1|1|A|A|513
1KD1|1|A|G|514
1KD1|1|A|C|515
1KD1|1|A|A|516
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain 3
- RIBOSOMAL PROTEIN L39E
- Chain E
- RIBOSOMAL PROTEIN L4
- Chain S
- RIBOSOMAL PROTEIN L22
- Chain U
- RIBOSOMAL PROTEIN L24
Coloring options: