J3_1KD1_015
3D structure
- PDB id
- 1KD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- ACGAAG*CGUGAUACAG*CGUACU
- Length
- 22 nucleotides
- Bulged bases
- 1KD1|1|A|U|328
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1KD1_015 not in the Motif Atlas
- Homologous match to J3_4V9F_015
- Geometric discrepancy: 0.0227
- The information below is about J3_4V9F_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_59706.1
- Basepair signature
- cWW-F-F-F-cHH-cWW-tHS-F-F-cSW-cWW-tHS-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
1KD1|1|A|A|302
1KD1|1|A|C|303
1KD1|1|A|G|304
1KD1|1|A|A|305
1KD1|1|A|A|306
1KD1|1|A|G|307
*
1KD1|1|A|C|323
1KD1|1|A|G|324
1KD1|1|A|U|325
1KD1|1|A|G|326
1KD1|1|A|A|327
1KD1|1|A|U|328
1KD1|1|A|A|329
1KD1|1|A|C|330
1KD1|1|A|A|331
1KD1|1|A|G|332
*
1KD1|1|A|C|344
1KD1|1|A|G|345
1KD1|1|A|U|346
1KD1|1|A|A|347
1KD1|1|A|C|348
1KD1|1|A|U|349
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain E
- RIBOSOMAL PROTEIN L4
- Chain U
- RIBOSOMAL PROTEIN L24
Coloring options: