J3_1KD1_019
3D structure
- PDB id
- 1KD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CC*GUCGAU*AACAG
- Length
- 13 nucleotides
- Bulged bases
- 1KD1|1|A|C|2850, 1KD1|1|A|A|2852
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1KD1_019 not in the Motif Atlas
- Homologous match to J3_4V9F_019
- Geometric discrepancy: 0.0835
- The information below is about J3_4V9F_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76911.2
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
1KD1|1|A|C|2831
1KD1|1|A|C|2832
*
1KD1|1|A|G|2848
1KD1|1|A|U|2849
1KD1|1|A|C|2850
1KD1|1|A|G|2851
1KD1|1|A|A|2852
1KD1|1|A|U|2853
*
1KD1|1|A|A|2905
1KD1|1|A|A|2906
1KD1|1|A|C|2907
1KD1|1|A|A|2908
1KD1|1|A|G|2909
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain D
- RIBOSOMAL PROTEIN L3
- Chain S
- RIBOSOMAL PROTEIN L22
- Chain Y
- RIBOSOMAL PROTEIN L31E
Coloring options: