J3_1KQS_007

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCUG*CUCAC*GGACACC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1KQS_007 not in the Motif Atlas

Homologous match to J3_4V9F_007

Geometric discrepancy: 0.0599

The information below is about J3_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_86017.1

Basepair signature

cWW-F-F-F-F-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

1KQS|1|0|G|2131
1KQS|1|0|C|2132
1KQS|1|0|U|2133
1KQS|1|0|G|2134
*
1KQS|1|0|C|2241
1KQS|1|0|U|2242
1KQS|1|0|C|2243
1KQS|1|0|A|2244
1KQS|1|0|C|2245
*
1KQS|1|0|G|2256
1KQS|1|0|G|2257
1KQS|1|0|A|2258
1KQS|1|0|C|2259
1KQS|1|0|A|2260
1KQS|1|0|C|2261
1KQS|1|0|C|2262

Current chains

Chain 0

23S RRNA

Nearby chains

Chain A

RIBOSOMAL PROTEIN L2

Chain L

RIBOSOMAL PROTEIN L15E