J3_1KQS_016

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCGGUC*GGAAA*UG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1KQS_016 not in the Motif Atlas

Homologous match to J3_4V9F_016

Geometric discrepancy: 0.0479

The information below is about J3_4V9F_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

1KQS|1|0|C|1450
1KQS|1|0|C|1451
1KQS|1|0|G|1452
1KQS|1|0|G|1453
1KQS|1|0|U|1454
1KQS|1|0|C|1455
*
1KQS|1|0|G|1490
1KQS|1|0|G|1491
1KQS|1|0|A|1492
1KQS|1|0|A|1493
1KQS|1|0|A|1494
*
1KQS|1|0|U|1511
1KQS|1|0|G|1512

Current chains

Chain 0

23S RRNA

Nearby chains

Chain 1

RIBOSOMAL PROTEIN L39E

Chain R

RIBOSOMAL PROTEIN L23

Chain Z

RIBOSOMAL PROTEIN L37E