J3_1KQS_019

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CC*GUCGAU*AACAG

Length

13 nucleotides

Bulged bases

1KQS|1|0|C|2850, 1KQS|1|0|A|2852

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1KQS_019 not in the Motif Atlas

Homologous match to J3_4V9F_019

Geometric discrepancy: 0.0801

The information below is about J3_4V9F_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

1KQS|1|0|C|2831
1KQS|1|0|C|2832
*
1KQS|1|0|G|2848
1KQS|1|0|U|2849
1KQS|1|0|C|2850
1KQS|1|0|G|2851
1KQS|1|0|A|2852
1KQS|1|0|U|2853
*
1KQS|1|0|A|2905
1KQS|1|0|A|2906
1KQS|1|0|C|2907
1KQS|1|0|A|2908
1KQS|1|0|G|2909

Current chains

Chain 0

23S RRNA

Nearby chains

Chain B

RIBOSOMAL PROTEIN L3

Chain Q

RIBOSOMAL PROTEIN L22

Chain W

RIBOSOMAL PROTEIN L31E