3D structure

PDB id
1M1K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Co-crystal structure of azithromycin bound to the 50S ribosomal subunit of Haloarcula marismortui
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CCGGUC*GGAAA*UG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_1M1K_016 not in the Motif Atlas
Geometric match to J3_4V9F_016
Geometric discrepancy: 0.0518
The information below is about J3_4V9F_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_31965.2
Basepair signature
cWW-F-cWW-F-F-F-F-F-cWW-F
Number of instances in this motif group
6

Unit IDs

1M1K|1|A|C|1450
1M1K|1|A|C|1451
1M1K|1|A|G|1452
1M1K|1|A|G|1453
1M1K|1|A|U|1454
1M1K|1|A|C|1455
*
1M1K|1|A|G|1490
1M1K|1|A|G|1491
1M1K|1|A|A|1492
1M1K|1|A|A|1493
1M1K|1|A|A|1494
*
1M1K|1|A|U|1511
1M1K|1|A|G|1512

Current chains

Chain A
23S RRNA

Nearby chains

Chain 3
RIBOSOMAL PROTEIN L39E
Chain T
RIBOSOMAL PROTEIN L23

Coloring options:


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