J3_1N32_011
3D structure
- PDB id
- 1N32 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position at the a site with paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GCCUAAG*UAGGAAUCU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 1N32|1|A|C|48, 1N32|1|A|A|50, 1N32|1|A|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1N32_011 not in the Motif Atlas
- Homologous match to J3_4LFB_014
- Geometric discrepancy: 0.059
- The information below is about J3_4LFB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.1
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
1N32|1|A|G|46
1N32|1|A|C|47
1N32|1|A|C|48
1N32|1|A|U|49
1N32|1|A|A|50
1N32|1|A|A|51
1N32|1|A|G|52
*
1N32|1|A|U|359
1N32|1|A|A|360
1N32|1|A|G|361
1N32|1|A|G|362
1N32|1|A|A|363
1N32|1|A|A|364
1N32|1|A|U|365
1N32|1|A|C|366
1N32|1|A|U|367
*
1N32|1|A|A|393
1N32|1|A|G|394
1N32|1|A|C|395
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain L
- 30S RIBOSOMAL PROTEIN S12
- Chain P
- 30S RIBOSOMAL PROTEIN S16
Coloring options: