J3_4LFB_014

3D structure

PDB id

4LFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

4LFB|1|A|A|50, 4LFB|1|A|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.1

Basepair signature

cWW-F-tWH-cSW-cWW-cWW-F-F-cSW-cWW

Number of instances in this motif group

5

Unit IDs

4LFB|1|A|G|46
4LFB|1|A|C|47
4LFB|1|A|C|48
4LFB|1|A|U|49
4LFB|1|A|A|50
4LFB|1|A|A|51
4LFB|1|A|G|52
*
4LFB|1|A|U|359
4LFB|1|A|A|360
4LFB|1|A|G|361
4LFB|1|A|G|362
4LFB|1|A|A|363
4LFB|1|A|A|364
4LFB|1|A|U|365
4LFB|1|A|C|366
4LFB|1|A|U|367
*
4LFB|1|A|A|393
4LFB|1|A|G|394
4LFB|1|A|C|395

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

ribosomal protein S12

Chain P

ribosomal protein S16