J3_1N33_002
3D structure
- PDB id
- 1N33 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1N33_002 not in the Motif Atlas
- Homologous match to J3_4LFB_002
- Geometric discrepancy: 0.0738
- The information below is about J3_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.1
- Basepair signature
- cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW
- Number of instances in this motif group
- 5
Unit IDs
1N33|1|A|C|936
1N33|1|A|A|937
1N33|1|A|A|938
1N33|1|A|G|939
*
1N33|1|A|C|1344
1N33|1|A|U|1345
1N33|1|A|A|1346
1N33|1|A|G|1347
1N33|1|A|U|1348
1N33|1|A|A|1349
1N33|1|A|A|1350
*
1N33|1|A|U|1372
1N33|1|A|G|1373
1N33|1|A|A|1374
1N33|1|A|A|1375
1N33|1|A|U|1376
1N33|1|A|A|1377
1N33|1|A|C|1378
1N33|1|A|G|1379
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain G
- 30S RIBOSOMAL PROTEIN S7
- Chain I
- 30S RIBOSOMAL PROTEIN S9
Coloring options: