Motif J3_85722.1 Version J3_85722.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 10 | 11 | break | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 1-19 | 2-18 | 3-16 | 4-5 | 4-15 | 6-16 | 7-15 | 7-16 | 8-9 | 9-14 | 10-13 | 11-12 | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_4LFB_002 | 4LFB | 0.5810 | 0 | A | SSU rRNA | C | 936 | A | 937 | A | 938 | G | 939 | * | C | 1344 | U | 1345 | A | 1346 | G | 1347 | U | 1348 | A | 1349 | A | 1350 | * | U | 1372 | G | 1373 | A | 1374 | A | 1375 | U | 1376 | A | 1377 | C | 1378 | G | 1379 | cWW | tSH | csS | cWW | cSs | tWWa | tHH | cSH | tWH | tHS | cWW | |
| 2 | J3_8B0X_005 | 8B0X | 0.5571 | 0 | A | SSU rRNA | C | 936 | A | 937 | A | 938 | G | 939 | * | C | 1344 | U | 1345 | A | 1346 | G | 1347 | U | 1348 | A | 1349 | A | 1350 | * | U | 1372 | G | 1373 | A | 1374 | A | 1375 | U | 1376 | A | 1377 | C | 1378 | G | 1379 | cWW | tSH | csS | cWW | cSs | tWWa | tHH | cSH | tWH | tHS | cWW | |
| 3 | J3_8GLP_016 | 8GLP | 0.1165 | 0 | S2 | SSU rRNA | C | 1218 | C | 1219 | A | 1220 | G | 1221 | * | C | 1645 | C | 1646 | A | 1647 | G | 1648 | U | 1649 | A | 1650 | A | 1651 | * | U | 1673 | G | 1674 | A | 1675 | U | 1676 | U | 1677 | A2M | 1678 | A | 1679 | G | 1680 | cWW | csS | cWW | tHH | cSH | tWH | tHS | cWW | ||||
| 4 | J3_8CRE_078 | 8CRE | 0.0000 | 0 | CM | SSU rRNA | C | 1146 | C | 1147 | A | 1148 | G | 1149 | * | C | 1568 | U | 1569 | A | 1570 | G | 1571 | U | 1572 | A | 1573 | A | 1574 | * | U | 1596 | G | 1597 | A | 1598 | U | 1599 | U | 1600 | A | 1601 | C | 1602 | G | 1603 | cWW | csS | cWW | tWWa | tHH | cSH | tWH | tHS | cWW | |||
| 5 | J3_8P9A_076 | 8P9A | 0.0987 | 0 | sR | SSU rRNA | C | 1161 | C | 1162 | A | 1163 | G | 1164 | * | C | 1581 | U | 1582 | A | 1583 | G | 1584 | U | 1585 | A | 1586 | A | 1587 | * | U | 1609 | G | 1610 | A | 1611 | U | 1612 | U | 1613 | A | 1614 | C | 1615 | G | 1616 | cWW | csS | cWW | tWWa | tHH | cSH | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAG*CUAGUAA*UGAAUACG | 2 |
| CCAG*CUAGUAA*UGAUUACG | 2 |
| CCAG*CCAGUAA*UGAUU(A2M)AG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*UAGUA*GAAUAC | 2 |
| CA*UAGUA*GAUUAC | 2 |
| CA*CAGUA*GAUU(A2M)A | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW
- Heat map statistics
- Min 0.06 | Avg 0.31 | Max 0.60
Coloring options: