J3_1N33_003

3D structure

PDB id

1N33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1N33_003 not in the Motif Atlas

Geometric match to J3_4LFB_003

Geometric discrepancy: 0.0799

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

1N33|1|A|U|943
1N33|1|A|G|944
1N33|1|A|G|945
1N33|1|A|A|946
*
1N33|1|A|U|1235
1N33|1|A|A|1236
1N33|1|A|C|1237
*
1N33|1|A|G|1337
1N33|1|A|G|1338
1N33|1|A|A|1339
1N33|1|A|A|1340

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain I

30S RIBOSOMAL PROTEIN S9

Chain M

30S RIBOSOMAL PROTEIN S13

Chain V

30S RIBOSOMAL PROTEIN THX