J3_1N33_013
3D structure
- PDB id
- 1N33 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- CGG*CUAGA*UGACG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1N33_013 not in the Motif Atlas
- Homologous match to J3_4LFB_015
- Geometric discrepancy: 0.0544
- The information below is about J3_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.4
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
1N33|1|A|C|586
1N33|1|A|G|587
1N33|1|A|G|588
*
1N33|1|A|C|651
1N33|1|A|U|652
1N33|1|A|A|653
1N33|1|A|G|654
1N33|1|A|A|655
*
1N33|1|A|U|751
1N33|1|A|G|752
1N33|1|A|A|753
1N33|1|A|C|754
1N33|1|A|G|755
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain H
- 30S RIBOSOMAL PROTEIN S8
- Chain L
- 30S RIBOSOMAL PROTEIN S12
- Chain O
- 30S RIBOSOMAL PROTEIN S15
- Chain Q
- 30S RIBOSOMAL PROTEIN S17
Coloring options: