J3_4LFB_015

3D structure

PDB id

4LFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

CGG*CUAGA*UGACG

Length

13 nucleotides

Bulged bases

4LFB|1|A|A|653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17385.2

Basepair signature

cWW-tSH-cWW-tHW-cWW-cWW-F

Number of instances in this motif group

7

Unit IDs

4LFB|1|A|C|586
4LFB|1|A|G|587
4LFB|1|A|G|588
*
4LFB|1|A|C|651
4LFB|1|A|U|652
4LFB|1|A|A|653
4LFB|1|A|G|654
4LFB|1|A|A|655
*
4LFB|1|A|U|751
4LFB|1|A|G|752
4LFB|1|A|A|753
4LFB|1|A|C|754
4LFB|1|A|G|755

Current chains

Chain A

16S rRNA

Nearby chains

Chain H

ribosomal protein S8

Chain L

ribosomal protein S12

Chain O

ribosomal protein S15

Chain Q

ribosomal protein S17