3D structure

PDB id
1N34 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of codon and crystallographically disordered near-cognate transfer rna anticodon stem-loop mismatched at the first codon position
Experimental method
X-RAY DIFFRACTION
Resolution
3.8 Å

Loop

Sequence
CGUCAG*CGCAACC*GACGACG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_1N34_007 not in the Motif Atlas
Geometric match to J3_4LFB_007
Geometric discrepancy: 0.156
The information below is about J3_4LFB_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_01343.1
Basepair signature
cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

1N34|1|A|C|1063
1N34|1|A|G|1064
1N34|1|A|U|1065
1N34|1|A|C|1066
1N34|1|A|A|1067
1N34|1|A|G|1068
*
1N34|1|A|C|1107
1N34|1|A|G|1108
1N34|1|A|C|1109
1N34|1|A|A|1110
1N34|1|A|A|1111
1N34|1|A|C|1112
1N34|1|A|C|1113
*
1N34|1|A|G|1187
1N34|1|A|A|1188
1N34|1|A|C|1189
1N34|1|A|G|1190
1N34|1|A|A|1191
1N34|1|A|C|1192
1N34|1|A|G|1193

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain B
30S RIBOSOMAL PROTEIN S2
Chain C
30S RIBOSOMAL PROTEIN S3
Chain E
30S RIBOSOMAL PROTEIN S5
Chain G
30S RIBOSOMAL PROTEIN S7
Chain I
30S RIBOSOMAL PROTEIN S9
Chain J
30S RIBOSOMAL PROTEIN S10
Chain N
30S RIBOSOMAL PROTEIN S14

Coloring options:


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