J3_1N36_014

3D structure

PDB id

1N36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of crystallographically disordered codon and near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CCUUGACAUGCUAGGGAACCCGGGU*GCCUGGGGUGCCCCGCGAGGGGAGCCCUAGCACAGGUGC*GCCCUUACGG

Length

74 nucleotides

Bulged bases

1N36|1|A|C|1006, 1N36|1|A|U|1049, 1N36|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1N36|1|A|C|989
1N36|1|A|C|990
1N36|1|A|U|991
1N36|1|A|U|992
1N36|1|A|G|993
1N36|1|A|A|994
1N36|1|A|C|995
1N36|1|A|A|996
1N36|1|A|U|997
1N36|1|A|G|998
1N36|1|A|C|999
1N36|1|A|U|1000
1N36|1|A|A|1001
1N36|1|A|G|1002
1N36|1|A|G|1003
1N36|1|A|G|1003|||A
1N36|1|A|A|1004
1N36|1|A|A|1005
1N36|1|A|C|1006
1N36|1|A|C|1007
1N36|1|A|C|1008
1N36|1|A|G|1009
1N36|1|A|G|1010
1N36|1|A|G|1011
1N36|1|A|U|1012
*
1N36|1|A|G|1017
1N36|1|A|C|1018
1N36|1|A|C|1019
1N36|1|A|U|1020
1N36|1|A|G|1021
1N36|1|A|G|1022
1N36|1|A|G|1023
1N36|1|A|G|1024
1N36|1|A|U|1025
1N36|1|A|G|1026
1N36|1|A|C|1027
1N36|1|A|C|1028
1N36|1|A|C|1029
1N36|1|A|C|1030
1N36|1|A|G|1030|||A
1N36|1|A|C|1030|||B
1N36|1|A|G|1030|||C
1N36|1|A|A|1030|||D
1N36|1|A|G|1031
1N36|1|A|G|1032
1N36|1|A|G|1033
1N36|1|A|G|1034
1N36|1|A|A|1035
1N36|1|A|G|1036
1N36|1|A|C|1037
1N36|1|A|C|1038
1N36|1|A|C|1039
1N36|1|A|U|1040
1N36|1|A|A|1041
1N36|1|A|G|1042
1N36|1|A|C|1043
1N36|1|A|A|1044
1N36|1|A|C|1045
1N36|1|A|A|1046
1N36|1|A|G|1047
1N36|1|A|G|1048
1N36|1|A|U|1049
1N36|1|A|G|1050
1N36|1|A|C|1051
*
1N36|1|A|G|1207
1N36|1|A|C|1208
1N36|1|A|C|1209
1N36|1|A|C|1210
1N36|1|A|U|1211
1N36|1|A|U|1212
1N36|1|A|A|1213
1N36|1|A|C|1214
1N36|1|A|G|1215
1N36|1|A|G|1216

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain C

30S RIBOSOMAL PROTEIN S3

Chain N

30S RIBOSOMAL PROTEIN S14

Chain S

30S RIBOSOMAL PROTEIN S19