J3_1N8R_002
3D structure
- PDB id
- 1N8R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of large ribosomal subunit in complex with virginiamycin M
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CGAUCUA*UAG*CGAG
- Length
- 14 nucleotides
- Bulged bases
- 1N8R|1|A|U|777, 1N8R|1|A|G|885
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1N8R_002 not in the Motif Atlas
- Homologous match to J3_4V9F_002
- Geometric discrepancy: 0.0379
- The information below is about J3_4V9F_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.1
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
1N8R|1|A|C|774
1N8R|1|A|G|775
1N8R|1|A|A|776
1N8R|1|A|U|777
1N8R|1|A|C|778
1N8R|1|A|U|779
1N8R|1|A|A|780
*
1N8R|1|A|U|866
1N8R|1|A|A|867
1N8R|1|A|G|868
*
1N8R|1|A|C|884
1N8R|1|A|G|885
1N8R|1|A|A|886
1N8R|1|A|G|887
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L37e
- Chain 3
- 50S ribosomal protein L39e
- Chain C
- 50S ribosomal protein L2P
- Chain N
- 50S ribosomal protein L15E
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