J3_1N8R_016
3D structure
- PDB id
- 1N8R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of large ribosomal subunit in complex with virginiamycin M
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CCGGUC*GGAAA*UG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1N8R_016 not in the Motif Atlas
- Homologous match to J3_4V9F_016
- Geometric discrepancy: 0.0491
- The information below is about J3_4V9F_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
1N8R|1|A|C|1450
1N8R|1|A|C|1451
1N8R|1|A|G|1452
1N8R|1|A|G|1453
1N8R|1|A|U|1454
1N8R|1|A|C|1455
*
1N8R|1|A|G|1490
1N8R|1|A|G|1491
1N8R|1|A|A|1492
1N8R|1|A|A|1493
1N8R|1|A|A|1494
*
1N8R|1|A|U|1511
1N8R|1|A|G|1512
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L39e
- Chain T
- 50S ribosomal protein L23P
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