J3_1NJM_002

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CCAG*CGAAC*GAUGAG

Length

15 nucleotides

Bulged bases

1NJM|1|0|A|777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1NJM_002 not in the Motif Atlas

Homologous match to J3_7A0S_005

Geometric discrepancy: 0.5708

The information below is about J3_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.2

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

10

Unit IDs

1NJM|1|0|C|710
1NJM|1|0|C|711
1NJM|1|0|A|712
1NJM|1|0|G|713
*
1NJM|1|0|C|745
1NJM|1|0|G|746
1NJM|1|0|A|747
1NJM|1|0|A|748
1NJM|1|0|C|749
*
1NJM|1|0|G|773
1NJM|1|0|A|774
1NJM|1|0|U|775
1NJM|1|0|G|776
1NJM|1|0|A|777
1NJM|1|0|G|778

Current chains

Chain 0

23S ribosomal RNA

Nearby chains