J3_1NJM_004

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGUAAG*CGA*UAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1NJM_004 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.3062

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

1NJM|1|0|C|1311
1NJM|1|0|G|1312
1NJM|1|0|U|1313
1NJM|1|0|A|1314
1NJM|1|0|A|1315
1NJM|1|0|G|1316
*
1NJM|1|0|C|1641
1NJM|1|0|G|1642
1NJM|1|0|A|1643
*
1NJM|1|0|U|1656
1NJM|1|0|A|1657
1NJM|1|0|A|1658
1NJM|1|0|G|1659

Current chains

Chain 0

23S ribosomal RNA

Nearby chains