J3_1NJM_006

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

AUUG*CUAAC*GGACCGU

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1NJM_006 not in the Motif Atlas

Geometric match to J3_4V9F_007

Geometric discrepancy: 0.391

The information below is about J3_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_86017.1

Basepair signature

cWW-F-F-F-F-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

1NJM|1|0|A|2073
1NJM|1|0|U|2074
1NJM|1|0|U|2075
1NJM|1|0|G|2076
*
1NJM|1|0|C|2179
1NJM|1|0|U|2180
1NJM|1|0|A|2181
1NJM|1|0|A|2182
1NJM|1|0|C|2183
*
1NJM|1|0|G|2202
1NJM|1|0|G|2203
1NJM|1|0|A|2204
1NJM|1|0|C|2205
1NJM|1|0|C|2206
1NJM|1|0|G|2207
1NJM|1|0|U|2208

Current chains

Chain 0

23S ribosomal RNA

Nearby chains