J3_1NJM_009

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

AC*GAAAAGC*GAUGU

Length

14 nucleotides

Bulged bases

1NJM|1|0|A|72, 1NJM|1|0|A|73

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1NJM_009 not in the Motif Atlas

Homologous match to J3_7A0S_002

Geometric discrepancy: 0.4275

The information below is about J3_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_01004.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

11

Unit IDs

1NJM|1|0|A|55
1NJM|1|0|C|56
*
1NJM|1|0|G|69
1NJM|1|0|A|70
1NJM|1|0|A|71
1NJM|1|0|A|72
1NJM|1|0|A|73
1NJM|1|0|G|74
1NJM|1|0|C|75
*
1NJM|1|0|G|108
1NJM|1|0|A|109
1NJM|1|0|U|110
1NJM|1|0|G|111
1NJM|1|0|U|112

Current chains

Chain 0

23S ribosomal RNA

Nearby chains