J3_1NJM_018

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

1NJM|1|0|A|2497, 1NJM|1|0|U|2498

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1NJM_018 not in the Motif Atlas

Homologous match to J3_9DFE_017

Geometric discrepancy: 0.3266

The information below is about J3_9DFE_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

1NJM|1|0|C|2496
1NJM|1|0|A|2497
1NJM|1|0|U|2498
1NJM|1|0|C|2499
*
1NJM|1|0|G|2524
1NJM|1|0|U|2525
1NJM|1|0|U|2526
*
1NJM|1|0|A|2540
1NJM|1|0|U|2541
1NJM|1|0|U|2542
1NJM|1|0|A|2543
1NJM|1|0|A|2544
1NJM|1|0|A|2545
1NJM|1|0|G|2546

Current chains

Chain 0

23S ribosomal RNA

Nearby chains