Motif J3_32601.6 Version J3_32601.6 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-3 | 2-10 | 3-10 | 4-12 | 5-6 | 7-11 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_9DFE_017 | 9DFE | 0.1154 | 2 | 1A | LSU rRNA | C | 2517 | C | 2520 | * | G | 2545 | U | 2546 | U | 2547 | * | A | 2561 | U | 2562 | U | 2563 | A | 2564 | A | 2565 | A | 2566 | G | 2567 | cWW | cWW | ncsS | tsS | cWH | cWW | tWH |
| 2 | J3_7A0S_011 | 7A0S | 0.1023 | 2 | X | LSU rRNA | C | 2496 | C | 2499 | * | G | 2524 | U | 2525 | U | 2526 | * | A | 2540 | U | 2541 | U | 2542 | A | 2543 | A | 2544 | A | 2545 | G | 2546 | cWW | cWW | tsS | cWH | cWW | tWH | |
| 3 | J3_4WF9_009 | 4WF9 | 0.0000 | 2 | X | LSU rRNA | C | 2544 | C | 2547 | * | G | 2572 | U | 2573 | U | 2574 | * | A | 2588 | U | 2589 | U | 2590 | A | 2591 | A | 2592 | A | 2593 | G | 2594 | cWW | cWW | tsS | cWH | cWW | tWH | |
| 4 | J3_8B0X_023 | 8B0X | 0.1286 | 2 | a | LSU rRNA | C | 2521 | C | 2524 | * | G | 2549 | U | 2550 | A | 2551 | * | U | 2565 | U | 2566 | U | 2567 | A | 2568 | A | 2569 | A | 2570 | G | 2571 | cWW | cWW | tsS | cWH | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUC*GUU*AUUAAAG | 3 |
| CAUC*GUA*UUUAAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AU*U*UUAAA | 4 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-cWH-cWW-tWH-tSS-F-cWW-F
- Heat map statistics
- Min 0.09 | Avg 0.11 | Max 0.21
Coloring options: