J3_1NJN_002

3D structure

PDB id

1NJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CCAG*CGAAC*GAUGAG

Length

15 nucleotides

Bulged bases

1NJN|1|0|A|777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1NJN_002 not in the Motif Atlas

Homologous match to J3_7A0S_005

Geometric discrepancy: 0.5712

The information below is about J3_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.2

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

10

Unit IDs

1NJN|1|0|C|710
1NJN|1|0|C|711
1NJN|1|0|A|712
1NJN|1|0|G|713
*
1NJN|1|0|C|745
1NJN|1|0|G|746
1NJN|1|0|A|747
1NJN|1|0|A|748
1NJN|1|0|C|749
*
1NJN|1|0|G|773
1NJN|1|0|A|774
1NJN|1|0|U|775
1NJN|1|0|G|776
1NJN|1|0|A|777
1NJN|1|0|G|778

Current chains

Chain 0

23S ribosomal RNA

Nearby chains