J3_1NJN_006

3D structure

PDB id

1NJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

AUUG*CUAAC*GGACCGU

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1NJN_006 not in the Motif Atlas

Geometric match to J3_4V9F_007

Geometric discrepancy: 0.3924

The information below is about J3_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_86017.1

Basepair signature

cWW-F-F-F-F-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

1NJN|1|0|A|2073
1NJN|1|0|U|2074
1NJN|1|0|U|2075
1NJN|1|0|G|2076
*
1NJN|1|0|C|2179
1NJN|1|0|U|2180
1NJN|1|0|A|2181
1NJN|1|0|A|2182
1NJN|1|0|C|2183
*
1NJN|1|0|G|2202
1NJN|1|0|G|2203
1NJN|1|0|A|2204
1NJN|1|0|C|2205
1NJN|1|0|C|2206
1NJN|1|0|G|2207
1NJN|1|0|U|2208

Current chains

Chain 0

23S ribosomal RNA

Nearby chains