J3_1NJN_010

3D structure

PDB id

1NJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UCGGGAC*GACAG*CA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1NJN_010 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.3471

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

1NJN|1|0|U|1357
1NJN|1|0|C|1358
1NJN|1|0|G|1359
1NJN|1|0|G|1360
1NJN|1|0|G|1361
1NJN|1|0|A|1362
1NJN|1|0|C|1363
*
1NJN|1|0|G|1394
1NJN|1|0|A|1395
1NJN|1|0|C|1396
1NJN|1|0|A|1397
1NJN|1|0|G|1398
*
1NJN|1|0|C|1415
1NJN|1|0|A|1416

Current chains

Chain 0

23S ribosomal RNA

Nearby chains