Motif J3_04858.2 Version J3_04858.2 of this group appears in releases 3.54 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | break | 11 | 12 | 1-12 | 5-8 | 6-7 | 10-11 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_5J7L_043 | 5J7L | 0.0000 | 0 | DA | LSU rRNA | U | 1344 | C | 1345 | G | 1346 | A | 1347 | C | 1348 | C | 1349 | * | G | 1382 | A | 1383 | A | 1384 | A | 1385 | * | U | 1402 | A | 1403 | cWW | cWW | cWW | |
| 2 | J3_5TBW_010 | 5TBW | 0.6968 | 1 | 1 | LSU rRNA | U | 1526 | C | 1527 | G | 1528 | A | 1529 | U | 1530 | C | 1531 | * | G | 1591 | G | 1592 | A | 1594 | U | 1595 | * | A | 1612 | A | 1613 | cWW | ntHS | cWW | cWW |
| 3 | J3_7RQB_009 | 7RQB | 0.8168 | 2 | 1A | LSU rRNA | G | 1344 | C | 1345 | G | 1346 | G | 1347 | G | 1348 | C | 1350 | * | G | 1381 | G | 1382 | A | 1384 | G | 1385 | * | C | 1402 | C | 1403 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCGACC*GAAA*UA | 1 |
| UCGAUC*GGAAU*AA | 1 |
| GCGGGAC*GGCAG*CC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGAC*AA* | 1 |
| CGAU*GAA* | 1 |
| CGGGA*GCA* | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW
- Heat map statistics
- Min 0.51 | Avg 0.45 | Max 0.82
Coloring options: