J3_1NJO_006

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

AUUG*CUAAC*GGACCGU

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1NJO_006 not in the Motif Atlas

Geometric match to J3_4V9F_007

Geometric discrepancy: 0.3911

The information below is about J3_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_86017.1

Basepair signature

cWW-F-F-F-F-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

1NJO|1|0|A|2073
1NJO|1|0|U|2074
1NJO|1|0|U|2075
1NJO|1|0|G|2076
*
1NJO|1|0|C|2179
1NJO|1|0|U|2180
1NJO|1|0|A|2181
1NJO|1|0|A|2182
1NJO|1|0|C|2183
*
1NJO|1|0|G|2202
1NJO|1|0|G|2203
1NJO|1|0|A|2204
1NJO|1|0|C|2205
1NJO|1|0|C|2206
1NJO|1|0|G|2207
1NJO|1|0|U|2208

Current chains

Chain 0

23S ribosomal RNA

Nearby chains