J3_1NJO_019

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

1NJO|1|0|A|2497, 1NJO|1|0|U|2498

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1NJO_019 not in the Motif Atlas

Homologous match to J3_9DFE_017

Geometric discrepancy: 0.3267

The information below is about J3_9DFE_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

1NJO|1|0|C|2496
1NJO|1|0|A|2497
1NJO|1|0|U|2498
1NJO|1|0|C|2499
*
1NJO|1|0|G|2524
1NJO|1|0|U|2525
1NJO|1|0|U|2526
*
1NJO|1|0|A|2540
1NJO|1|0|U|2541
1NJO|1|0|U|2542
1NJO|1|0|A|2543
1NJO|1|0|A|2544
1NJO|1|0|A|2545
1NJO|1|0|G|2546

Current chains

Chain 0

23S ribosomal RNA

Nearby chains