J3_1NJP_004

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGUAAG*CGA*UAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1NJP_004 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.307

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

1NJP|1|0|C|1311
1NJP|1|0|G|1312
1NJP|1|0|U|1313
1NJP|1|0|A|1314
1NJP|1|0|A|1315
1NJP|1|0|G|1316
*
1NJP|1|0|C|1641
1NJP|1|0|G|1642
1NJP|1|0|A|1643
*
1NJP|1|0|U|1656
1NJP|1|0|A|1657
1NJP|1|0|A|1658
1NJP|1|0|G|1659

Current chains

Chain 0

23S ribosomal RNA

Nearby chains