J3_1NJP_006

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AUUG*CUAAC*GGACCGU

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1NJP_006 not in the Motif Atlas

Geometric match to J3_4V9F_007

Geometric discrepancy: 0.3914

The information below is about J3_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_86017.1

Basepair signature

cWW-F-F-F-F-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

1NJP|1|0|A|2073
1NJP|1|0|U|2074
1NJP|1|0|U|2075
1NJP|1|0|G|2076
*
1NJP|1|0|C|2179
1NJP|1|0|U|2180
1NJP|1|0|A|2181
1NJP|1|0|A|2182
1NJP|1|0|C|2183
*
1NJP|1|0|G|2202
1NJP|1|0|G|2203
1NJP|1|0|A|2204
1NJP|1|0|C|2205
1NJP|1|0|C|2206
1NJP|1|0|G|2207
1NJP|1|0|U|2208

Current chains

Chain 0

23S ribosomal RNA

Nearby chains