J3_1NJP_010

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UCGGGAC*GACAG*CA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1NJP_010 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.3458

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

1NJP|1|0|U|1357
1NJP|1|0|C|1358
1NJP|1|0|G|1359
1NJP|1|0|G|1360
1NJP|1|0|G|1361
1NJP|1|0|A|1362
1NJP|1|0|C|1363
*
1NJP|1|0|G|1394
1NJP|1|0|A|1395
1NJP|1|0|C|1396
1NJP|1|0|A|1397
1NJP|1|0|G|1398
*
1NJP|1|0|C|1415
1NJP|1|0|A|1416

Current chains

Chain 0

23S ribosomal RNA

Nearby chains