J3_1NJP_013

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCUG*CGAUAGCGCAUAGUAC*GGAAAG

Length

26 nucleotides

Bulged bases

1NJP|1|0|U|460, 1NJP|1|0|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1NJP_013 not in the Motif Atlas

Homologous match to J3_7A0S_016

Geometric discrepancy: 0.3043

The information below is about J3_7A0S_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.1

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

10

Unit IDs

1NJP|1|0|C|32
1NJP|1|0|C|33
1NJP|1|0|U|34
1NJP|1|0|G|35
*
1NJP|1|0|C|457
1NJP|1|0|G|458
1NJP|1|0|A|459
1NJP|1|0|U|460
1NJP|1|0|A|461
1NJP|1|0|G|462
1NJP|1|0|C|463
1NJP|1|0|G|464
1NJP|1|0|C|465
1NJP|1|0|A|466
1NJP|1|0|U|467
1NJP|1|0|A|468
1NJP|1|0|G|469
1NJP|1|0|U|470
1NJP|1|0|A|471
1NJP|1|0|C|472
*
1NJP|1|0|G|479
1NJP|1|0|G|480
1NJP|1|0|A|481
1NJP|1|0|A|482
1NJP|1|0|A|483
1NJP|1|0|G|484

Current chains

Chain 0

23S ribosomal RNA

Nearby chains