Motif J3_07616.1 Version J3_07616.1 of this group appears in releases 4.0 to 4.0

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7		8		9		10		11		12		13		14		15	break		16		17		18		19		20		21	break		22		23		24	1-4	1-24	2-9	3-23	4-9	5-24	7-11	11-19	12-13	13-18	14-17	15-16	21-22
1	J3_7A0S_016	7A0S	0.3693	2	X	LSU rRNA	C	457	G	458	A	459	A	461	G	462	C	463	G	464	C	465	A	466	U	467	A	468	G	469	U	470	A	471	C	472	*	G	479	G	480	A	481	A	482	A	483	G	484	*	C	32	C	33	G	35	cSs	cWW	tSW	tHW	ntWH	tSS	tsS	tHH	cSH	tWH	tHS	cWW	cWW
2	J3_8B0X_033	8B0X	0.0710	3	a	LSU rRNA	C	445	G	446	A	447	A	449	G	450	U	451	G	452	A	453	A	454	C	455	A	457	G	458	U	459	A	460	C	461	*	G	468	G	469	A	470	A	471	A	472	G	473	*	C	32	C	33	G	35	ncSs	cWW	tSW	tHW	tWH	tSS	tsS	tHH	cSH	tWH	tHS	cWW	cWW
3	J3_9AXU_004	9AXU	0.0410	3	2+4	LSU rRNA + 5.8S rRNA	C	348	G	349	A	350	A	352	G	353	C	354	G	355	A	356	A	357	C	358	A	360	G	361	U	362	A	363	G	364	*	C	371	G	372	A	373	A	374	A	375	G	376	*	C	29	U	30	G	32	ncSs	cWW	tSW	tHW	tWH	tSS	tsS	tHH	cSH	tWH	tHS	cWW	cWW
4	J3_8GLP_024	8GLP	0.0000	3	L5+L8	LSU rRNA + 5.8S rRNA	C	351	G	352	A	353	A	355	G	356	U	357	C	358	A	359	A	360	C	361	A	363	G	364	U	365	A	366	C	367	*	G	374	G	375	A	376	A	377	A	378	G	379	*	C	21	U	22	G	24	cSs	cWW	tSW	tHW	tWH	tSS	tsS	tHH	cSH	tWH	tHS	cWW	cWW
5	J3_8P9A_045	8P9A	0.0448	3	AR+AT	LSU rRNA + 5.8S rRNA	C	340	G	341	A	342	A	344	G	345	C	346	G	347	A	348	A	349	C	350	A	352	G	353	U	354	A	355	C	356	*	G	363	G	364	A	365	A	366	A	367	G	368	*	C	21	U	22	G	24	cSs	cWW	tSW	tHW	ntWH	tSS	tsS	tHH	cSH	tWH	tHS	cWW	cWW
6	J3_8OI5_004	8OI5	0.0458	3	1+4	LSU rRNA + 5.8S rRNA	C	340	G	341	A	342	A	344	G	345	C	346	G	347	A	348	A	349	C	350	A	352	G	353	U	354	A	355	C	356	*	G	363	G	364	A	365	A	366	A	367	G	368	*	C	21	U	22	G	24	cSs	cWW	tSW	tHW	tWH	tSS	tsS	tHH	cSH	tWH	tHS	cWW	cWW
7	J3_9E6Q_003	9E6Q	0.0693	3	1	LSU rRNA	C	476	G	477	A	478	A	480	G	481	C	482	G	483	C	484	A	485	C	486	A	488	G	489	U	490	A	491	OMC	492	*	G	499	G	500	A	501	A	502	A	503	G	504	*	C	25	U	26	G	28	cSs	cWW	tSW	tHW	tWH	tSS	tsS	tHH	cSH	tWH	tHS	cWW	cWW
8	J3_4V9F_013	4V9F	0.0878	3	0	LSU rRNA	C	451	G	452	A	453	A	455	G	456	U	457	G	458	A	459	A	460	C	461	A	463	G	464	U	465	A	466	G	467	*	C	474	G	475	A	476	A	477	C	478	G	479	*	C	29	U	30	G	32	ncSs	cWW	tSW	tHW	tWH	tSS	tsS	tHH	cSH	tWH	tHS	cWW	cWW
9	J3_9DFE_003	9DFE	0.1948	3	1A	LSU rRNA	C	445	G	446	A	447	A	449	G	450	C	451	G	452	C	453	A	454	C	455	A	457	G	458	U	459	A	460	C	461	*	G	468	G	469	A	470	A	471	A	472	G	473	*	C	32	U	33	G	35	ncSs	cWW	tSW	tHW	tWH	tSS	tsS	tHH	cSH	tWH	tHS	cWW	cWW
10	J3_4WF9_012	4WF9	0.2197	3	X	LSU rRNA	C	491	G	492	A	493	A	495	G	496	U	497	G	498	A	499	A	500	C	501	A	503	G	504	U	505	A	506	C	507	*	G	514	G	515	A	516	A	517	A	518	G	519	*	C	32	U	33	G	35		cWW	tSW	tHW	tWH	ntSS			cSH	tWH		cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGAUAGCGAACAAGUACGGAAAGCUUG	2
CCUGCGAUAGCGCAUAGUACGGAAAG	1
CCUGCGAUAGUGAACCAGUACGGAAAG	1
CGAUAGCGAACAAGUAGCGAAAGCUUG	1
CGAUAGUCAACAAGUACGGAAAGCUCG	1
CUCGCGAUAGCGCACUAGUAOMCGGAAAG	1
CUCGCGAUAGUGAACAAGUAGCGAACG	1
CUCGCGAUAGCGCACCAGUACGGAAAG	1
CUUGCGAUAGUGAACCAGUACGGAAAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAUAGCGAACAAGUAGAAAUU	3
CUGAUAGCGCAUAGUAGAAA	1
CUGAUAGUGAACCAGUAGAAA	1
GAUAGUCAACAAGUAGAAAUC	1
UCGAUAGCGCACUAGUAGAAA	1
UCGAUAGUGAACAAGUAGAAC	1
UCGAUAGCGCACCAGUAGAAA	1
UUGAUAGUGAACCAGUAGAAA	1

Release history

Release	4.0
Date	2025-08-13
Status	New id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (10)
Basepair signature: cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
Heat map statistics: Min 0.04 | Avg 0.16 | Max 0.40

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Coloring options: Nucleotide numbers

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