J3_1NJP_017

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAGAGAACC

Length

28 nucleotides

Bulged bases

1NJP|1|0|G|514, 1NJP|1|0|A|518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1NJP_017 not in the Motif Atlas

Homologous match to J3_7A0S_015

Geometric discrepancy: 0.3741

The information below is about J3_7A0S_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

1NJP|1|0|G|30
1NJP|1|0|C|31
*
1NJP|1|0|G|485
1NJP|1|0|U|486
1NJP|1|0|G|487
1NJP|1|0|A|488
1NJP|1|0|A|489
1NJP|1|0|A|490
1NJP|1|0|A|491
1NJP|1|0|G|492
1NJP|1|0|A|493
1NJP|1|0|A|494
1NJP|1|0|C|495
*
1NJP|1|0|G|506
1NJP|1|0|A|507
1NJP|1|0|G|508
1NJP|1|0|U|509
1NJP|1|0|G|510
1NJP|1|0|A|511
1NJP|1|0|A|512
1NJP|1|0|A|513
1NJP|1|0|G|514
1NJP|1|0|A|515
1NJP|1|0|G|516
1NJP|1|0|A|517
1NJP|1|0|A|518
1NJP|1|0|C|519
1NJP|1|0|C|520

Current chains

Chain 0

23S ribosomal RNA

Nearby chains