J3_1NKW_010
3D structure
- PDB id
- 1NKW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- AC*GAAAAGC*GAUGU
- Length
- 14 nucleotides
- Bulged bases
- 1NKW|1|0|A|70, 1NKW|1|0|A|72, 1NKW|1|0|A|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1NKW_010 not in the Motif Atlas
- Homologous match to J3_5J7L_037
- Geometric discrepancy: 0.4288
- The information below is about J3_5J7L_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
1NKW|1|0|A|55
1NKW|1|0|C|56
*
1NKW|1|0|G|69
1NKW|1|0|A|70
1NKW|1|0|A|71
1NKW|1|0|A|72
1NKW|1|0|A|73
1NKW|1|0|G|74
1NKW|1|0|C|75
*
1NKW|1|0|G|108
1NKW|1|0|A|109
1NKW|1|0|U|110
1NKW|1|0|G|111
1NKW|1|0|U|112
Current chains
- Chain 0
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain R
- 50S ribosomal protein L23
- Chain W
- 50S ribosomal protein L29
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