J3_1NKW_018

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUCAA*UGUAGAGC*GUAGAAG

Length

20 nucleotides

Bulged bases

1NKW|1|0|U|2275, 1NKW|1|0|U|2298, 1NKW|1|0|A|2299, 1NKW|1|0|G|2313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NKW|1|0|C|2274
1NKW|1|0|U|2275
1NKW|1|0|C|2276
1NKW|1|0|A|2277
1NKW|1|0|A|2278
*
1NKW|1|0|U|2296
1NKW|1|0|G|2297
1NKW|1|0|U|2298
1NKW|1|0|A|2299
1NKW|1|0|G|2300
1NKW|1|0|A|2301
1NKW|1|0|G|2302
1NKW|1|0|C|2303
*
1NKW|1|0|G|2310
1NKW|1|0|U|2311
1NKW|1|0|A|2312
1NKW|1|0|G|2313
1NKW|1|0|A|2314
1NKW|1|0|A|2315
1NKW|1|0|G|2316

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain D

50S ribosomal protein L5

Chain M

50S ribosomal protein L18

Chain U

50S ribosomal protein L27