J3_1NWY_010
3D structure
- PDB id
- 1NWY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- AC*GAAAAGC*GAUGU
- Length
- 14 nucleotides
- Bulged bases
- 1NWY|1|0|A|70, 1NWY|1|0|A|72, 1NWY|1|0|A|73, 1NWY|1|0|G|111
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1NWY_010 not in the Motif Atlas
- Homologous match to J3_5J7L_037
- Geometric discrepancy: 0.429
- The information below is about J3_5J7L_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
1NWY|1|0|A|55
1NWY|1|0|C|56
*
1NWY|1|0|G|69
1NWY|1|0|A|70
1NWY|1|0|A|71
1NWY|1|0|A|72
1NWY|1|0|A|73
1NWY|1|0|G|74
1NWY|1|0|C|75
*
1NWY|1|0|G|108
1NWY|1|0|A|109
1NWY|1|0|U|110
1NWY|1|0|G|111
1NWY|1|0|U|112
Current chains
- Chain 0
- 23S RIBOSOMAL RRNA
Nearby chains
- Chain 2
- ribosomal protein L34
- Chain R
- ribosomal protein L23
- Chain W
- ribosomal protein L29
Coloring options: