J3_1NWY_014
3D structure
- PDB id
- 1NWY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CCUG*CGAUAGCGCAUAGUAC*GGAAAG
- Length
- 26 nucleotides
- Bulged bases
- 1NWY|1|0|U|34, 1NWY|1|0|U|460, 1NWY|1|0|U|467
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1NWY_014 not in the Motif Atlas
- Homologous match to J3_7A0S_016
- Geometric discrepancy: 0.2373
- The information below is about J3_7A0S_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.2
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 11
Unit IDs
1NWY|1|0|C|32
1NWY|1|0|C|33
1NWY|1|0|U|34
1NWY|1|0|G|35
*
1NWY|1|0|C|457
1NWY|1|0|G|458
1NWY|1|0|A|459
1NWY|1|0|U|460
1NWY|1|0|A|461
1NWY|1|0|G|462
1NWY|1|0|C|463
1NWY|1|0|G|464
1NWY|1|0|C|465
1NWY|1|0|A|466
1NWY|1|0|U|467
1NWY|1|0|A|468
1NWY|1|0|G|469
1NWY|1|0|U|470
1NWY|1|0|A|471
1NWY|1|0|C|472
*
1NWY|1|0|G|479
1NWY|1|0|G|480
1NWY|1|0|A|481
1NWY|1|0|A|482
1NWY|1|0|A|483
1NWY|1|0|G|484
Current chains
- Chain 0
- 23S RIBOSOMAL RRNA
Nearby chains
- Chain 2
- ribosomal protein L34
- Chain C
- ribosomal protein L4
- Chain O
- ribosomal protein L20
- Chain R
- ribosomal protein L23
- Chain S
- ribosomal protein L24
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