J3_1OND_002

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCAG*CGAAC*GAUGAG

Length

15 nucleotides

Bulged bases

1OND|1|0|U|775, 1OND|1|0|A|777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1OND_002 not in the Motif Atlas

Geometric match to J3_5TBW_005

Geometric discrepancy: 0.2894

The information below is about J3_5TBW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_33851.1

Basepair signature

cWW-tSH-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

1OND|1|0|C|710
1OND|1|0|C|711
1OND|1|0|A|712
1OND|1|0|G|713
*
1OND|1|0|C|745
1OND|1|0|G|746
1OND|1|0|A|747
1OND|1|0|A|748
1OND|1|0|C|749
*
1OND|1|0|G|773
1OND|1|0|A|774
1OND|1|0|U|775
1OND|1|0|G|776
1OND|1|0|A|777
1OND|1|0|G|778

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains