J3_1OND_012

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAGAGAACC

Length

28 nucleotides

Bulged bases

1OND|1|0|G|514, 1OND|1|0|A|518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1OND_012 not in the Motif Atlas

Homologous match to J3_4WF9_011

Geometric discrepancy: 0.3287

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.2

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

10

Unit IDs

1OND|1|0|G|30
1OND|1|0|C|31
*
1OND|1|0|G|485
1OND|1|0|U|486
1OND|1|0|G|487
1OND|1|0|A|488
1OND|1|0|A|489
1OND|1|0|A|490
1OND|1|0|A|491
1OND|1|0|G|492
1OND|1|0|A|493
1OND|1|0|A|494
1OND|1|0|C|495
*
1OND|1|0|G|506
1OND|1|0|A|507
1OND|1|0|G|508
1OND|1|0|U|509
1OND|1|0|G|510
1OND|1|0|A|511
1OND|1|0|A|512
1OND|1|0|A|513
1OND|1|0|G|514
1OND|1|0|A|515
1OND|1|0|G|516
1OND|1|0|A|517
1OND|1|0|A|518
1OND|1|0|C|519
1OND|1|0|C|520

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain Q

50S ribosomal protein L22