J3_1OND_017

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UUG*CUAAC*GGACCG

Length

14 nucleotides

Bulged bases

1OND|1|0|U|2075, 1OND|1|0|A|2181

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1OND_017 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.3803

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

1OND|1|0|U|2074
1OND|1|0|U|2075
1OND|1|0|G|2076
*
1OND|1|0|C|2179
1OND|1|0|U|2180
1OND|1|0|A|2181
1OND|1|0|A|2182
1OND|1|0|C|2183
*
1OND|1|0|G|2202
1OND|1|0|G|2203
1OND|1|0|A|2204
1OND|1|0|C|2205
1OND|1|0|C|2206
1OND|1|0|G|2207

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains