J3_1Q86_016

3D structure

PDB id

1Q86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UG*CUGCAAAGUACC*GAGGCGAAAUAGAGCA

Length

30 nucleotides

Bulged bases

1Q86|1|A|U|510, 1Q86|1|A|G|514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1Q86_016 not in the Motif Atlas

Homologous match to J3_4V9F_012

Geometric discrepancy: 0.0343

The information below is about J3_4V9F_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24879.1

Basepair signature

cWW-cWW-cWS-tSH-F-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

1Q86|1|A|U|27
1Q86|1|A|G|28
*
1Q86|1|A|C|480
1Q86|1|A|U|481
1Q86|1|A|G|482
1Q86|1|A|C|483
1Q86|1|A|A|484
1Q86|1|A|A|485
1Q86|1|A|A|486
1Q86|1|A|G|487
1Q86|1|A|U|488
1Q86|1|A|A|489
1Q86|1|A|C|490
1Q86|1|A|C|491
*
1Q86|1|A|G|501
1Q86|1|A|A|502
1Q86|1|A|G|503
1Q86|1|A|G|504
1Q86|1|A|C|505
1Q86|1|A|G|506
1Q86|1|A|A|507
1Q86|1|A|A|508
1Q86|1|A|A|509
1Q86|1|A|U|510
1Q86|1|A|A|511
1Q86|1|A|G|512
1Q86|1|A|A|513
1Q86|1|A|G|514
1Q86|1|A|C|515
1Q86|1|A|A|516

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain 3

50S ribosomal protein L39e

Chain E

50S ribosomal protein L4E

Chain S

50S ribosomal protein L22P

Chain U

50S ribosomal protein L24P