J3_1Q86_018

3D structure

PDB id

1Q86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

ACGAAG*CGUGAUACAG*CGUACU

Length

22 nucleotides

Bulged bases

1Q86|1|A|U|328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1Q86_018 not in the Motif Atlas

Homologous match to J3_4V9F_015

Geometric discrepancy: 0.0261

The information below is about J3_4V9F_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_59706.1

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-F-cSW-cWW-tHS-F-cWW

Number of instances in this motif group

1

Unit IDs

1Q86|1|A|A|302
1Q86|1|A|C|303
1Q86|1|A|G|304
1Q86|1|A|A|305
1Q86|1|A|A|306
1Q86|1|A|G|307
*
1Q86|1|A|C|323
1Q86|1|A|G|324
1Q86|1|A|U|325
1Q86|1|A|G|326
1Q86|1|A|A|327
1Q86|1|A|U|328
1Q86|1|A|A|329
1Q86|1|A|C|330
1Q86|1|A|A|331
1Q86|1|A|G|332
*
1Q86|1|A|C|344
1Q86|1|A|G|345
1Q86|1|A|U|346
1Q86|1|A|A|347
1Q86|1|A|C|348
1Q86|1|A|U|349

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain E

50S ribosomal protein L4E

Chain U

50S ribosomal protein L24P