J3_1QA6_002

3D structure

PDB id

1QA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF A CONSERVED RIBOSOMAL PROTEIN-RNA COMPLEX

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1QA6_002 not in the Motif Atlas

Geometric match to J3_1MMS_001

Geometric discrepancy: 0.1034

The information below is about J3_1MMS_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

1QA6|1|D|G|105
1QA6|1|D|G|106
1QA6|1|D|A|107
*
1QA6|1|D|U|131
1QA6|1|D|U|132
1QA6|1|D|U|133
1QA6|1|D|A|134
1QA6|1|D|A|135
1QA6|1|D|A|136
1QA6|1|D|G|137
*
1QA6|1|D|C|152
1QA6|1|D|A|153
1QA6|1|D|C|154

Current chains

Chain D

58 NUCLEOTIDE RIBOSOMAL RNA DOMAIN

Nearby chains

Chain A

RIBOSOMAL PROTEIN L11

Chain B

RIBOSOMAL PROTEIN L11

Chain C

58 NUCLEOTIDE RIBOSOMAL RNA DOMAIN