J3_1QVF_013

3D structure

PDB id

1QVF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCGGUC*GGAAA*UG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1QVF_013 not in the Motif Atlas

Homologous match to J3_4V9F_016

Geometric discrepancy: 0.0529

The information below is about J3_4V9F_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

1QVF|1|0|C|1450
1QVF|1|0|C|1451
1QVF|1|0|G|1452
1QVF|1|0|G|1453
1QVF|1|0|U|1454
1QVF|1|0|C|1455
*
1QVF|1|0|G|1490
1QVF|1|0|G|1491
1QVF|1|0|A|1492
1QVF|1|0|A|1493
1QVF|1|0|A|1494
*
1QVF|1|0|U|1511
1QVF|1|0|G|1512

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 1

50S ribosomal protein L39e

Chain R

50S ribosomal protein L23P