J3_1QVF_018

3D structure

PDB id

1QVF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

ACGAAG*CGUGAUACAG*CGUACU

Length

22 nucleotides

Bulged bases

1QVF|1|0|U|328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1QVF_018 not in the Motif Atlas

Homologous match to J3_4V9F_015

Geometric discrepancy: 0.0208

The information below is about J3_4V9F_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_59706.1

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-F-cSW-cWW-tHS-F-cWW

Number of instances in this motif group

1

Unit IDs

1QVF|1|0|A|302
1QVF|1|0|C|303
1QVF|1|0|G|304
1QVF|1|0|A|305
1QVF|1|0|A|306
1QVF|1|0|G|307
*
1QVF|1|0|C|323
1QVF|1|0|G|324
1QVF|1|0|U|325
1QVF|1|0|G|326
1QVF|1|0|A|327
1QVF|1|0|U|328
1QVF|1|0|A|329
1QVF|1|0|C|330
1QVF|1|0|A|331
1QVF|1|0|G|332
*
1QVF|1|0|C|344
1QVF|1|0|G|345
1QVF|1|0|U|346
1QVF|1|0|A|347
1QVF|1|0|C|348
1QVF|1|0|U|349

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain C

50S ribosomal protein L4E

Chain S

50S ribosomal protein L24P