J3_1S72_003

3D structure

PDB id

1S72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

REFINED CRYSTAL STRUCTURE OF THE HALOARCULA MARISMORTUI LARGE RIBOSOMAL SUBUNIT AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CAA*UGUUAG*CGUG

Length

13 nucleotides

Bulged bases

1S72|1|0|U|825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1S72_003 not in the Motif Atlas

Homologous match to J3_4V9F_003

Geometric discrepancy: 0.018

The information below is about J3_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.1

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

1S72|1|0|C|789
1S72|1|0|A|790
1S72|1|0|A|791
*
1S72|1|0|U|823
1S72|1|0|G|824
1S72|1|0|U|825
1S72|1|0|U|826
1S72|1|0|A|827
1S72|1|0|G|828
*
1S72|1|0|C|853
1S72|1|0|G|854
1S72|1|0|U|855
1S72|1|0|G|856

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain P

50S ribosomal protein L19E

Chain Z

50S ribosomal protein L37Ae