J3_1SM1_005

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

1SM1|1|0|C|1623, 1SM1|1|0|A|1625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1SM1_005 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.3589

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

1SM1|1|0|C|1319
1SM1|1|0|A|1320
1SM1|1|0|A|1321
1SM1|1|0|G|1322
*
1SM1|1|0|C|1621
1SM1|1|0|G|1622
1SM1|1|0|C|1623
1SM1|1|0|A|1624
1SM1|1|0|A|1625
1SM1|1|0|A|1626
1SM1|1|0|C|1627
*
1SM1|1|0|G|1636
1SM1|1|0|U|1637
1SM1|1|0|G|1638

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34